To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RefPlus")

In most cases, you don't need to download the package archive at all.

RefPlus

A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.

Bioconductor version: Release (2.14)

The package contains functions for pre-processing Affymetrix data using the RMA+ and the RMA++ methods.

Author: Kai-Ming Chang <kaiming at gmail.com>, Chris Harbron <Chris.Harbron at astrazeneca.com>, Marie C South <Marie.C.South at astrazeneca.com>

Maintainer: Kai-Ming Chang <kaiming at gmail.com>

Citation (from within R, enter citation("RefPlus")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RefPlus")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RefPlus")

 

PDF R Script RefPlus Manual
PDF   Reference Manual

Details

biocViews Microarray, OneChannel, Preprocessing, Software
Version 1.34.0
In Bioconductor since BioC 2.0 (R-2.5)
License GPL (>= 2)
Depends R (>= 2.8.0), Biobase(>= 2.1.0), affy(>= 1.20.0), affyPLM(>= 1.18.0), preprocessCore(>= 1.4.0)
Imports
Suggests affydata
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RefPlus_1.34.0.tar.gz
Windows Binary RefPlus_1.34.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) RefPlus_1.34.0.tgz
Mac OS X 10.9 (Mavericks) RefPlus_1.34.0.tgz
Browse/checkout source (username/password: readonly)
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