To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MethTargetedNGS")

In most cases, you don't need to download the package archive at all.

MethTargetedNGS

DOI: 10.18129/B9.bioc.MethTargetedNGS    

Perform Methylation Analysis on Next Generation Sequencing Data

Bioconductor version: Release (3.6)

Perform step by step methylation analysis of Next Generation Sequencing data.

Author: Muhammad Ahmer Jamil with Contribution of Prof. Holger Frohlich and Priv.-Doz. Dr. Osman El-Maarri

Maintainer: Muhammad Ahmer Jamil <engr.ahmerjamil at gmail.com>

Citation (from within R, enter citation("MethTargetedNGS")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MethTargetedNGS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MethTargetedNGS")

 

PDF R Script Introduction to MethTargetedNGS
PDF   Reference Manual

Details

biocViews Alignment, DataImport, Genetics, ResearchField, SequenceMatching, Sequencing, Software
Version 1.10.0
In Bioconductor since BioC 3.1 (R-3.2) (2.5 years)
License Artistic-2.0
Depends R (>= 3.1.2), stringr, seqinr, gplots, Biostrings
Imports
LinkingTo
Suggests
SystemRequirements HMMER3
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MethTargetedNGS_1.10.0.tar.gz
Windows Binary MethTargetedNGS_1.10.0.zip
Mac OS X 10.11 (El Capitan) MethTargetedNGS_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MethTargetedNGS
Package Short Url http://bioconductor.org/packages/MethTargetedNGS/
Package Downloads Report Download Stats

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