MethTargetedNGS

DOI: 10.18129/B9.bioc.MethTargetedNGS    

This is the development version of MethTargetedNGS; for the stable release version, see MethTargetedNGS.

Perform Methylation Analysis on Next Generation Sequencing Data

Bioconductor version: Development (3.8)

Perform step by step methylation analysis of Next Generation Sequencing data.

Author: Muhammad Ahmer Jamil with Contribution of Prof. Holger Frohlich and Priv.-Doz. Dr. Osman El-Maarri

Maintainer: Muhammad Ahmer Jamil <engr.ahmerjamil at gmail.com>

Citation (from within R, enter citation("MethTargetedNGS")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("MethTargetedNGS", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MethTargetedNGS")

 

PDF R Script Introduction to MethTargetedNGS
PDF   Reference Manual

Details

biocViews Alignment, DataImport, Genetics, ResearchField, SequenceMatching, Sequencing, Software
Version 1.13.0
In Bioconductor since BioC 3.1 (R-3.2) (3.5 years)
License Artistic-2.0
Depends R (>= 3.1.2), stringr, seqinr, gplots, Biostrings
Imports
LinkingTo
Suggests
SystemRequirements HMMER3
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MethTargetedNGS_1.13.0.tar.gz
Windows Binary MethTargetedNGS_1.13.0.zip
Mac OS X 10.11 (El Capitan) MethTargetedNGS_1.13.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MethTargetedNGS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MethTargetedNGS
Package Short Url http://bioconductor.org/packages/MethTargetedNGS/
Package Downloads Report Download Stats

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