DOI: 10.18129/B9.bioc.KEGGlincs    

Visualize all edges within a KEGG pathway and overlay LINCS data [option]

Bioconductor version: Release (3.6)

See what is going on 'under the hood' of KEGG pathways by explicitly re-creating the pathway maps from information obtained from KGML files.

Author: Shana White

Maintainer: Shana White <vandersm at>, Mario Medvedovic <medvedm at>

Citation (from within R, enter citation("KEGGlincs")):


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biocViews CellBiology, DataRepresentation, GeneExpression, GraphAndNetwork, KEGG, Network, NetworkInference, Pathways, Software, ThirdPartyClient
Version 1.4.0
In Bioconductor since BioC 3.4 (R-3.3) (1.5 years)
License GPL-3
Depends R (>= 3.3), KOdata, hgu133a.db,>= 3.3.0)
Imports AnnotationDbi, KEGGgraph, igraph, plyr, gtools, httr, RJSONIO, KEGGREST, methods, graphics, stats, utils, XML, grDevices
Suggests BiocInstaller(>= 1.20.3), knitr, graph
SystemRequirements Cytoscape (>= 3.3.0), Java (>= 8)
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