To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GRENITS")

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GRENITS

Gene Regulatory Network Inference Using Time Series

Bioconductor version: Release (3.0)

The package offers four network inference statistical models using Dynamic Bayesian Networks and Gibbs Variable Selection: a linear interaction model, two linear interaction models with added experimental noise (Gaussian and Student distributed) for the case where replicates are available and a non-linear interaction model.

Author: Edward Morrissey

Maintainer: Edward Morrissey <edward.morrissey at gmail.com>

Citation (from within R, enter citation("GRENITS")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GRENITS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GRENITS")

 

PDF R Script GRENITS
PDF   Reference Manual
Text   NEWS

Details

biocViews Bayesian, GeneExpression, GeneRegulation, GraphAndNetwork, Network, NetworkInference, Software, TimeCourse
Version 1.18.0
In Bioconductor since BioC 2.9 (R-2.14)
License GPL (>= 2)
Depends R (>= 2.12.0), Rcpp (>= 0.8.6), RcppArmadillo (>= 0.2.8), ggplot2 (>= 0.9.0)
Imports graphics, grDevices, reshape2, stats, utils
LinkingTo Rcpp, RcppArmadillo
Suggests network
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GRENITS_1.18.0.tar.gz
Windows Binary GRENITS_1.18.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GRENITS_1.18.0.tgz
Mac OS X 10.9 (Mavericks) GRENITS_1.18.0.tgz
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