GRENITS

Gene Regulatory Network Inference Using Time Series

Bioconductor version: Development (3.0)

The package offers four network inference statistical models using Dynamic Bayesian Networks and Gibbs Variable Selection: a linear interaction model, two linear interaction models with added experimental noise (Gaussian and Student distributed) for the case where replicates are available and a non-linear interaction model.

Author: Edward Morrissey

Maintainer: Edward Morrissey <edward.morrissey at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GRENITS")

To cite this package in a publication, start R and enter:

    citation("GRENITS")

Documentation

PDF R Script GRENITS
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneRegulation, GraphAndNetwork, NetworkInference, Software, TimeCourse
Version 1.17.0
In Bioconductor since BioC 2.9 (R-2.14)
License GPL (>= 2)
Depends R (>= 2.12.0), Rcpp (>= 0.8.6), RcppArmadillo (>= 0.2.8), ggplot2 (>= 0.9.0)
Imports graphics, grDevices, reshape2, stats, utils
Suggests network
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source GRENITS_1.17.0.tar.gz
Windows Binary GRENITS_1.17.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GRENITS_1.17.0.tgz
Mac OS X 10.9 (Mavericks)
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