To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DECIPHER")

In most cases, you don't need to download the package archive at all.

DECIPHER

 

   

Tools for curating, analyzing, and manipulating biological sequences

Bioconductor version: Release (3.3)

A toolset for deciphering and managing biological sequences.

Author: Erik Wright

Maintainer: Erik Wright <DECIPHER at cae.wisc.edu>

Citation (from within R, enter citation("DECIPHER")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DECIPHER")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DECIPHER")

 

PDF ArtOfAlignmentInR.pdf
PDF DECIPHERing.pdf
PDF DesignMicroarray.pdf
PDF DesignPrimers.pdf
PDF DesignProbes.pdf
PDF DesignSignatures.pdf
PDF FindChimeras.pdf
PDF   Reference Manual

Details

biocViews Alignment, Clustering, DataImport, Genetics, Microarray, Microbiome, QualityControl, Sequencing, Software, Visualization, WholeGenome, qPCR
Version 2.0.0
In Bioconductor since BioC 2.9 (R-2.14) (4.5 years)
License GPL-3
Depends R (>= 2.13.0), Biostrings(>= 2.35.12), RSQLite (>= 1.0.0), stats, parallel
Imports methods, DBI, S4Vectors, IRanges, XVector
LinkingTo Biostrings, RSQLite, S4Vectors, IRanges, XVector
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source DECIPHER_2.0.0.tar.gz
Windows Binary DECIPHER_2.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) DECIPHER_1.15.1.tgz
Mac OS X 10.9 (Mavericks) DECIPHER_2.0.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/DECIPHER/tree/release-3.3
Package Short Url http://bioconductor.org/packages/DECIPHER/
Package Downloads Report Download Stats

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