DOI: 10.18129/B9.bioc.DECIPHER    

This is the development version of DECIPHER; for the stable release version, see DECIPHER.

Tools for curating, analyzing, and manipulating biological sequences

Bioconductor version: Development (3.7)

A toolset for deciphering and managing biological sequences.

Author: Erik Wright

Maintainer: Erik Wright <eswright at>

Citation (from within R, enter citation("DECIPHER")):


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PDF R Script Classify Sequences
PDF R Script Design Group-Specific FISH Probes
PDF R Script Design Group-Specific Primers
PDF R Script Design Microarray Probes
PDF R Script Design Primers That Yield Group-Specific Signatures
PDF R Script Finding Chimeric Sequences
PDF R Script Getting Started DECIPHERing
PDF R Script The Art of Multiple Sequence Alignment in R
PDF   Reference Manual


biocViews Alignment, Clustering, DataImport, Genetics, Microarray, Microbiome, QualityControl, Sequencing, Software, Visualization, WholeGenome, qPCR
Version 2.7.2
In Bioconductor since BioC 2.9 (R-2.14) (6.5 years)
License GPL-3
Depends R (>= 3.3.0), Biostrings(>= 2.35.12), RSQLite (>= 1.1), stats, parallel
Imports methods, DBI, S4Vectors, IRanges, XVector
LinkingTo Biostrings, S4Vectors, IRanges, XVector
Depends On Me
Imports Me openPrimeR
Suggests Me
Build Report  

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Source Package DECIPHER_2.7.2.tar.gz
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Mac OS X 10.11 (El Capitan) DECIPHER_2.7.2.tgz
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