Convert segment data into a region by sample matrix to allow for other high level computational analyses.

Bioconductor version: Release (2.14)

This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data

Author: Jianhua Zhang

Maintainer: J. Zhang <jzhang at>

To install this package, start R and enter:


Citation (from within R, enter citation("CNTools")):


PDF R Script NCTools HowTo
PDF   Reference Manual


biocViews CopyNumberVariation, Microarray, Software
Version 1.20.0
In Bioconductor since BioC 2.5 (R-2.10)
License LGPL
Depends R (>= 2.10), methods, tools, stats, genefilter
System Requirements
Depends On Me cghMCR
Imports Me
Suggests Me

Package Downloads

Package Source CNTools_1.20.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) CNTools_1.20.0.tgz
Mac OS X 10.9 (Mavericks) CNTools_1.20.0.tgz
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