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This is the development version of spatialLIBD; for the stable release version, see spatialLIBD.
Bioconductor version: Development (3.13)
Inspect interactively the spatial transcriptomics 10x Genomics Visium data from Maynard, Collado-Torres et al, 2020 analyzed by Lieber Institute for Brain Development researchers and collaborators.
Author: Leonardo Collado-Torres <lcolladotor at gmail.com>, Kristen Maynard <Kristen.Maynard at libd.org>, R. Jaffe <andrew.jaffe at libd.org>, Andrew Pardo <bpardo at lcgej.unam.mx>, E. Collado-Torres <lcolladotor at gmail.com>, Brenda Maynard <Kristen.Maynard at libd.org>
Maintainer: Leonardo Collado-Torres <lcolladotor at gmail.com>
Citation (from within R,
enter citation("spatialLIBD")
):
To install this package, start R (version "4.1") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("spatialLIBD")
For older versions of R, please refer to the appropriate Bioconductor release.
Reference Manual |
biocViews | ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, PackageTypeData, SequencingData, SingleCellData, Tissue |
Version | 1.3.10 |
License | Artistic-2.0 |
Depends | SpatialExperiment(>= 1.1.5), R (>= 3.6) |
Imports | shiny, golem, ggplot2, cowplot, plotly, viridisLite, shinyWidgets, Polychrome, sessioninfo, grid, grDevices, methods, AnnotationHub, utils, png, scater, DT, ExperimentHub, RColorBrewer, SummarizedExperiment, stats, graphics, S4Vectors, IRanges, fields, benchmarkme, SingleCellExperiment, BiocFileCache, jsonlite, tibble |
LinkingTo | |
Suggests | knitr, RefManageR, rmarkdown, BiocStyle, testthat (>= 2.1.0), covr, here, BiocManager |
SystemRequirements | |
Enhances | |
URL | https://github.com/LieberInstitute/spatialLIBD |
BugReports | https://support.bioconductor.org/t/spatialLIBD |
Depends On Me | |
Imports Me | |
Suggests Me | BayesSpace |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
macOS 10.13 (High Sierra) | |
Source Repository | git clone https://git.bioconductor.org/packages/spatialLIBD |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/spatialLIBD |
Package Short Url | https://bioconductor.org/packages/spatialLIBD/ |
Package Downloads Report | Download Stats |
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