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This is the development version of pasillaBamSubset; for the stable release version, see pasillaBamSubset.

Subset of BAM files from "Pasilla" experiment

Bioconductor version: Development (3.0)

Subset of BAM files untreated1.bam (single-end reads) and untreated3.bam (paired-end reads) from "Pasilla" experiment (Pasilla knock-down by Brooks et al., Genome Research 2011). See the vignette in the pasilla data package for how BAM files untreated1.bam and untreated3.bam were obtained from the RNA-Seq read sequence data that is provided by NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181. Also contains the DNA sequence for fly chromosome 4 to which the reads can be mapped.

Author: H. Pages

Maintainer: H. Pages <hpages at>

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biocViews ExperimentData, RNAseqData
Version 0.3.0
License LGPL
Suggests pasilla
System Requirements
Depends On Me
Imports Me
Suggests Me GenomicAlignments, GenomicFeatures, GenomicRanges, Rsamtools, TransView

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