pasillaBamSubset

Subset of BAM files from "Pasilla" experiment

Bioconductor version: Release (2.14)

Subset of BAM files untreated1.bam (single-end reads) and untreated3.bam (paired-end reads) from "Pasilla" experiment (Pasilla knock-down by Brooks et al., Genome Research 2011). See the vignette in the pasilla data package for how BAM files untreated1.bam and untreated3.bam were obtained from the RNA-Seq read sequence data that is provided by NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181. Also contains the DNA sequence for fly chromosome 4 to which the reads can be mapped.

Author: H. Pages

Maintainer: H. Pages <hpages at fhcrc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("pasillaBamSubset")

To cite this package in a publication, start R and enter:

    citation("pasillaBamSubset")

Documentation

PDF   Reference Manual

Details

biocViews ExperimentData, RNAseqData
Version 0.2.0
License LGPL
Depends
Imports
Suggests pasilla
System Requirements
URL
Depends On Me
Imports Me
Suggests Me GenomicAlignments, GenomicFeatures, GenomicRanges, Rsamtools, TransView

Package Downloads

Package Source pasillaBamSubset_0.2.0.tar.gz
Windows Binary pasillaBamSubset_0.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) pasillaBamSubset_0.2.0.tgz
Mac OS X 10.9 (Mavericks) pasillaBamSubset_0.2.0.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center