To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("pasillaBamSubset")

In most cases, you don't need to download the package archive at all.

pasillaBamSubset

Subset of BAM files from "Pasilla" experiment

Bioconductor version: Release (3.0)

Subset of BAM files untreated1.bam (single-end reads) and untreated3.bam (paired-end reads) from "Pasilla" experiment (Pasilla knock-down by Brooks et al., Genome Research 2011). See the vignette in the pasilla data package for how BAM files untreated1.bam and untreated3.bam were obtained from the RNA-Seq read sequence data that is provided by NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181. Also contains the DNA sequence for fly chromosome 4 to which the reads can be mapped.

Author: H. Pages

Maintainer: H. Pages <hpages at fhcrc.org>

Citation (from within R, enter citation("pasillaBamSubset")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("pasillaBamSubset")

Documentation

PDF   Reference Manual

Details

biocViews ExperimentData, RNAseqData
Version 0.3.1
License LGPL
Depends
Imports
Suggests pasilla
System Requirements
URL
Depends On Me
Imports Me
Suggests Me GenomicAlignments, GenomicFeatures, GenomicRanges, Rsamtools, TransView

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source pasillaBamSubset_0.3.1.tar.gz
Windows Binary pasillaBamSubset_0.3.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) pasillaBamSubset_0.3.0.tgz
Mac OS X 10.9 (Mavericks) pasillaBamSubset_0.3.0.tgz
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