TargetScoreData

TargetScoreData

Bioconductor version: Development (3.0)

Precompiled and processed miRNA-overexpression fold-changes from 84 Gene Expression Omnibus (GEO) series corresponding to 6 platforms, 77 human cells or tissues, and 113 distinct miRNAs. Accompanied with the data, we also included in this package the sequence feature scores from TargetScanHuman 6.1 including the context+ score and the probabilities of conserved targeting for each miRNA-mRNA interaction. Thus, the user can use these static sequence-based scores together with user-supplied tissue/cell-specific fold-change due to miRNA overexpression to predict miRNA targets using the package TargetScore (download separately)

Author: Yue Li

Maintainer: Yue Li <yueli at cs.toronto.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("TargetScoreData")

To cite this package in a publication, start R and enter:

    citation("TargetScoreData")

Documentation

PDF R Script Processed human microRNA-overexpression data from GEO, and sequence information from TargetScan, and targetScore from TargetScore
PDF   Reference Manual

Details

biocViews ExperimentData, RNAExpressionData, miRNAoverexpression
Version 1.1.0
License GPL-2
Depends
Imports
Suggests TargetScore, gplots
System Requirements
URL
Depends On Me
Imports Me
Suggests Me TargetScore

Package Downloads

Package Source TargetScoreData_1.1.0.tar.gz
Windows Binary TargetScoreData_1.1.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) TargetScoreData_1.1.0.tgz
Mac OS X 10.9 (Mavericks) TargetScoreData_1.1.0.tgz
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