To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("BSgenome.Drerio.UCSC.danRer7")

In most cases, you don't need to download the package archive at all.

BSgenome.Drerio.UCSC.danRer7

This is the development version of BSgenome.Drerio.UCSC.danRer7; for the stable release version, see BSgenome.Drerio.UCSC.danRer7.

Full genome sequences for Danio rerio (UCSC version danRer7)

Bioconductor version: Development (3.0)

Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer7, Jul. 2010) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

To install this package, start R and enter:

Citation (from within R, enter citation("BSgenome.Drerio.UCSC.danRer7")):

Installation

source("http://bioconductor.org/biocLite.R")
biocLite("BSgenome.Drerio.UCSC.danRer7")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BSgenome.Drerio.UCSC.danRer7")

 

PDF   Reference Manual

Details

biocViews AnnotationData, BSgenome, Danio_rerio, Genetics
Version 1.4.0
License Artistic-2.0
Depends BSgenome(>= 1.33.5)
Imports BSgenome
Suggests GenomicFeatures
System Requirements
URL
Depends On Me BSgenome.Drerio.UCSC.danRer7.masked, cleanUpdTSeq
Imports Me BSgenome.Drerio.UCSC.danRer7.masked
Suggests Me CAGEr

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source BSgenome.Drerio.UCSC.danRer7_1.4.0.tar.gz
Windows Binary BSgenome.Drerio.UCSC.danRer7_1.3.99.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) BSgenome.Drerio.UCSC.danRer7_1.3.99.tgz
Mac OS X 10.9 (Mavericks) BSgenome.Drerio.UCSC.danRer7_1.3.99.tgz
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