tRNAscanImport

DOI: 10.18129/B9.bioc.tRNAscanImport    

This is the development version of tRNAscanImport; for the stable release version, see tRNAscanImport.

Importing a tRNAscan-SE result file as GRanges object

Bioconductor version: Development (3.15)

The package imports the result of tRNAscan-SE as a GRanges object.

Author: Felix G.M. Ernst <felix.gm.ernst at outlook.com>

Maintainer: <>

Citation (from within R, enter citation("tRNAscanImport")):

Installation

To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("tRNAscanImport")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews DataImport, Preprocessing, Software, Visualization, WorkflowStep
Version 1.15.0
In Bioconductor since BioC 3.7 (R-3.5) (3.5 years)
License GPL-3 + file LICENSE
Depends R (>= 3.5), GenomicRanges, tRNA
Imports methods, stringr, BiocGenerics, Biostrings, Structstrings, S4Vectors, IRanges, XVector, GenomeInfoDb, rtracklayer, BSgenome, Rsamtools
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, testthat, ggplot2, BSgenome.Scerevisiae.UCSC.sacCer3
SystemRequirements
Enhances
URL https://github.com/FelixErnst/tRNAscanImport
BugReports https://github.com/FelixErnst/tRNAscanImport/issues
Depends On Me
Imports Me
Suggests Me Structstrings, tRNA
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/tRNAscanImport
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tRNAscanImport
Package Short Url https://bioconductor.org/packages/tRNAscanImport/
Package Downloads Report Download Stats

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