To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("splatter")

In most cases, you don't need to download the package archive at all.

splatter

DOI: 10.18129/B9.bioc.splatter    

This is the development version of splatter; for the stable release version, see splatter.

Simple Simulation of Single-cell RNA Sequencing Data

Bioconductor version: Development (3.7)

Splatter is a package for the simulation of single-cell RNA sequencing count data. It provides a simple interface for creating complex simulations that are reproducible and well-documented. Parameters can be estimated from real data and functions are provided for comparing real and simulated datasets.

Author: Luke Zappia

Maintainer: Luke Zappia <luke.zappia at mcri.edu.au>

Citation (from within R, enter citation("splatter")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("splatter")

Documentation

HTML R Script An introduction to the Splatter package
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcriptomics
Version 1.3.0
In Bioconductor since BioC 3.5 (R-3.4) (0.5 years)
License GPL-3 + file LICENSE
Depends R (>= 3.4), scater, SingleCellExperiment
Imports akima, BiocGenerics, BiocParallel, checkmate, edgeR, fitdistrplus, ggplot2, locfit, matrixStats, methods, scales, stats, SummarizedExperiment, utils
LinkingTo
Suggests BiocStyle, covr, cowplot, knitr, limSolve, lme4, progress, pscl, testthat, rmarkdown, S4Vectors, scDD, scran, mfa, phenopath, zinbwave, BASiCS
SystemRequirements
Enhances
URL https://github.com/Oshlack/splatter
BugReports https://github.com/Oshlack/splatter/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package splatter_1.3.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) splatter_1.3.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/splatter
Package Short Url http://bioconductor.org/packages/splatter/
Package Downloads Report Download Stats

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