peakPantheR

DOI: 10.18129/B9.bioc.peakPantheR    

This is the development version of peakPantheR; for the stable release version, see peakPantheR.

Peak Picking and Annotation of High Resolution Experiments

Bioconductor version: Development (3.11)

An automated pipeline for the detection, integration and reporting of predefined features across a large number of mass spectrometry data files.

Author: Arnaud Wolfer [aut, cre] , Goncalo Correia [aut] , Jake Pearce [ctb], Caroline Sands [ctb]

Maintainer: Arnaud Wolfer <adwolfer at gmail.com>

Citation (from within R, enter citation("peakPantheR")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("peakPantheR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("peakPantheR")

 

HTML R Script Getting Started with the peakPantheR package
HTML R Script Parallel Annotation
HTML R Script Real Time Annotation
PDF   Reference Manual
Text   NEWS

Details

biocViews MassSpectrometry, Metabolomics, PeakDetection, Software
Version 1.1.0
In Bioconductor since BioC 3.10 (R-3.6) (< 6 months)
License GPL-3
Depends R (>= 3.6.0)
Imports foreach (>= 1.4.4), doParallel (>= 1.0.11), ggplot2 (>= 2.2.1), gridExtra (>= 2.3), MSnbase(>= 2.4.0), mzR(>= 2.12.0), stringr (>= 1.2.0), methods (>= 3.4.0), XML (>= 3.98.1.10), minpack.lm (>= 1.2.1), scales (>= 0.5.0), utils
LinkingTo
Suggests testthat, faahKO, msdata, knitr, rmarkdown, pander, BiocStyle
SystemRequirements
Enhances
URL https://github.com/phenomecentre/peakPantheR
BugReports https://github.com/phenomecentre/peakPantheR/issues/new
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package peakPantheR_1.1.0.tar.gz
Windows Binary peakPantheR_1.1.0.zip
Mac OS X 10.11 (El Capitan) peakPantheR_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/peakPantheR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/peakPantheR
Package Short Url https://bioconductor.org/packages/peakPantheR/
Package Downloads Report Download Stats

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