DOI: 10.18129/B9.bioc.ngsReports    

This is the development version of ngsReports; to use it, please install the devel version of Bioconductor.

Load FastqQC reports and other NGS related files

Bioconductor version: Development (3.10)

This package provides methods and object classes for parsing FastQC reports and output summaries from other NGS tools into R, as well as visualising the data loaded from these files.

Author: Steve Pederson [aut, cre], Christopher Ward [aut], Thu-Hien To [aut]

Maintainer: Steve Pederson <stephen.pederson at>

Citation (from within R, enter citation("ngsReports")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script An Introduction To ngsReports
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biocViews QualityControl, ReportWriting, Software
Version 1.1.0
In Bioconductor since BioC 3.9 (R-3.6) (< 6 months)
License LGPL (>= 3)
Depends BiocGenerics, ggplot2, tibble (>= 1.3.1)
Imports Biostrings, checkmate, dplyr (>= 0.7.5), ggdendro, grDevices, grid, lubridate, methods, parallel, plotly, readr, reshape2, rmarkdown, Rsamtools, scales, ShortRead, stats, stringr, tidyr, tidyselect (>= 0.2.3), truncnorm, utils, viridisLite, XVector, zoo
Suggests BiocStyle, Cairo, knitr, pander, testthat
Depends On Me
Imports Me
Suggests Me
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package ngsReports_1.1.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.11 (El Capitan) ngsReports_1.1.0.tgz
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Source Repository (Developer Access) git clone
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