To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("microbiome")

In most cases, you don't need to download the package archive at all.

microbiome

DOI: 10.18129/B9.bioc.microbiome    

This is the development version of microbiome; to use it, please install the devel version of Bioconductor.

Microbiome Analytics

Bioconductor version: Development (3.6)

Utilities for microbiome analysis.

Author: Leo Lahti [aut, cre], Sudarshan Shetty [aut], Jarkko Salojarvi [ctb]

Maintainer: Leo Lahti <leo.lahti at iki.fi>

Citation (from within R, enter citation("microbiome")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("microbiome")

Documentation

HTML R Script microbiome R package
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Clustering, Metagenomics, Microbiome, Sequencing, Software, SystemsBiology
Version 0.99.84
License BSD_2_clause + file LICENSE
Depends R (>= 3.4.0), phyloseq, ggplot2
Imports dplyr, reshape2, stats, tidyr, utils, vegan
LinkingTo
Suggests BiocGenerics, BiocStyle, Cairo, knitcitations, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL http://microbiome.github.io/microbiome
BugReports https://github.com/microbiome/microbiome/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package microbiome_0.99.84.tar.gz
Windows Binary microbiome_0.99.84.zip
Mac OS X 10.11 (El Capitan) microbiome_0.99.84.tgz
Source Repository git clone https://git.bioconductor.org/packages/microbiome
Package Short Url http://bioconductor.org/packages/microbiome/
Package Downloads Report Download Stats

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