To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("methInheritSim")

In most cases, you don't need to download the package archive at all.

methInheritSim

DOI: 10.18129/B9.bioc.methInheritSim    

This is the development version of methInheritSim; to use it, please install the devel version of Bioconductor.

Simulating Whole-Genome Inherited Bisulphite Sequencing Data

Bioconductor version: Development (3.6)

Simulate a multigeneration methylation case versus control experiment with inheritance relation using a real control dataset.

Author: Pascal Belleau, Astrid DeschĂȘnes and Arnaud Droit

Maintainer: Pascal Belleau <pascal_belleau at hotmail.com>

Citation (from within R, enter citation("methInheritSim")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("methInheritSim")

Documentation

HTML R Script Simulating Whole-Genome Inherited Bisulphite Sequencing Data
PDF   Reference Manual
Text   NEWS

Details

biocViews BiologicalQuestion, DNAMethylation, DifferentialMethylation, Epigenetics, MethylSeq, Sequencing, Software, StatisticalMethod, WholeGenome
Version 0.99.11
In Bioconductor since BioC 3.6 (R-3.4)
License Artistic-2.0
Depends R (>= 3.4)
Imports methylKit, GenomicRanges, GenomeInfoDb, parallel, BiocGenerics, S4Vectors, methods, stats, IRanges, msm
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, RUnit
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source methInheritSim_0.99.11.tar.gz
Windows Binary methInheritSim_0.99.11.zip
Mac OS X 10.11 (El Capitan) methInheritSim_0.99.11.tgz
Source Repository git clone https://git.bioconductor.org/packages/methInheritSim
Package Short Url http://bioconductor.org/packages/methInheritSim/
Package Downloads Report Download Stats

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