mBPCR

Bayesian Piecewise Constant Regression for DNA copy number estimation

Bioconductor version: Development (3.0)

Estimates the DNA copy number profile using mBPCR to detect regions with copy number changes

Author: P.M.V. Rancoita <rancoita.paola at gmail.com>, with contributions from M. Hutter <marcus.hutter at anu.edu.au>

Maintainer: P.M.V. Rancoita <rancoita.paola at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("mBPCR")

To cite this package in a publication, start R and enter:

    citation("mBPCR")

Documentation

PDF R Script mBPCR
PDF   Reference Manual

Details

biocViews CopyNumberVariation, Microarray, SNP, Software, aCGH
Version 1.19.0
In Bioconductor since BioC 2.5 (R-2.10)
License GPL (>= 2)
Depends oligoClasses, SNPchip
Imports Biobase
Suggests xtable
System Requirements
URL http://www.idsia.ch/~paola/mBPCR
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source mBPCR_1.19.0.tar.gz
Windows Binary mBPCR_1.19.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) mBPCR_1.19.0.tgz
Mac OS X 10.9 (Mavericks)
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