fobitools

DOI: 10.18129/B9.bioc.fobitools    

This is the development version of fobitools; to use it, please install the devel version of Bioconductor.

Tools For Manipulating FOBI Ontology

Bioconductor version: Development (3.13)

A set of tools for interacting with Food-Biomarker Ontology (FOBI). A collection of basic manipulation tools for biological significance analysis, graphs, and text mining strategies for annotating nutritional data.

Author: Pol Castellano-Escuder [aut, cre] , Cristina Andrés-Lacueva [aut] , Alex Sánchez-Pla [aut]

Maintainer: Pol Castellano-Escuder <polcaes at gmail.com>

Citation (from within R, enter citation("fobitools")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("fobitools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fobitools")

 

HTML R Script Dietary data annotation
HTML R Script Food enrichment analysis
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, BiomedicalInformatics, Cheminformatics, GraphAndNetwork, MassSpectrometry, Metabolomics, Pathways, Software, Visualization
Version 0.99.37
In Bioconductor since BioC 3.13 (R-4.1)
License GPL-3
Depends R (>= 4.1)
Imports clisymbols, crayon, dplyr, ggplot2, ggraph, magrittr, ontologyIndex, purrr, RecordLinkage, sigora, stringr, textclean, tictoc, tidygraph, tidyr, vroom
LinkingTo
Suggests BiocStyle, covr, kableExtra, knitr, rmarkdown, testthat (>= 2.3.2), tidyverse
SystemRequirements
Enhances
URL https://github.com/pcastellanoescuder/fobitools/
BugReports https://github.com/pcastellanoescuder/fobitools/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package fobitools_0.99.37.tar.gz
Windows Binary fobitools_0.99.37.zip
macOS 10.13 (High Sierra) fobitools_0.99.37.tgz
Source Repository git clone https://git.bioconductor.org/packages/fobitools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/fobitools
Package Short Url https://bioconductor.org/packages/fobitools/
Package Downloads Report Download Stats

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