dStruct

DOI: 10.18129/B9.bioc.dStruct    

This is the development version of dStruct; to use it, please install the devel version of Bioconductor.

Identifying differentially reactive regions from RNA structurome profiling data

Bioconductor version: Development (3.14)

dStruct identifies differentially reactive regions from RNA structurome profiling data. dStruct is compatible with a broad range of structurome profiling technologies, e.g., SHAPE-MaP, DMS-MaPseq, Structure-Seq, SHAPE-Seq, etc. See Choudhary et al, Genome Biology, 2019 for the underlying method.

Author: Krishna Choudhary [aut, cre] , Sharon Aviran [aut]

Maintainer: Krishna Choudhary <kchoudhary at ucdavis.edu>

Citation (from within R, enter citation("dStruct")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("dStruct")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dStruct")

 

HTML R Script Differential RNA structurome analysis using `dStruct`
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Details

biocViews Sequencing, Software, StatisticalMethod, StructuralPrediction
Version 0.99.3
In Bioconductor since BioC 3.14 (R-4.1)
License GPL (>= 2)
Depends R (>= 4.1)
Imports zoo, ggplot2, purrr, reshape2, parallel, IRanges, S4Vectors, rlang, grDevices, stats, utils
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
SystemRequirements
Enhances
URL https://github.com/dataMaster-Kris/dStruct
BugReports https://github.com/dataMaster-Kris/dStruct/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package dStruct_0.99.3.tar.gz
Windows Binary dStruct_0.99.3.zip
macOS 10.13 (High Sierra) dStruct_0.99.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/dStruct
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/dStruct
Package Short Url https://bioconductor.org/packages/dStruct/
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