chipseq

chipseq: A package for analyzing chipseq data

Bioconductor version: Development (3.0)

Tools for helping process short read data for chipseq experiments

Author: Deepayan Sarkar, Robert Gentleman, Michael Lawrence, Zizhen Yao

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("chipseq")

To cite this package in a publication, start R and enter:

    citation("chipseq")

Documentation

PDF R Script A Sample ChIP-Seq analysis workflow
PDF   Reference Manual

Details

biocViews ChIPSeq, Software
Version 1.15.0
In Bioconductor since BioC 2.5 (R-2.10)
License Artistic-2.0
Depends R (>= 2.10), methods, BiocGenerics(>= 0.1.0), IRanges(>= 1.13.4), GenomicRanges(>= 1.7.7), BSgenome, ShortRead
Imports methods, BiocGenerics, IRanges, BSgenome, GenomicRanges, lattice, ShortRead, stats
Suggests GenomicFeatures, TxDb.Mmusculus.UCSC.mm9.knownGene
System Requirements
URL
Depends On Me PING
Imports Me ChIPQC, HTSeqGenie
Suggests Me ggbio, oneChannelGUI

Package Downloads

Package Source chipseq_1.15.0.tar.gz
Windows Binary chipseq_1.15.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) chipseq_1.15.0.tgz
Mac OS X 10.9 (Mavericks)
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