barcodetrackR

DOI: 10.18129/B9.bioc.barcodetrackR    

This is the development version of barcodetrackR; for the stable release version, see barcodetrackR.

Functions for Analyzing Cellular Barcoding Data

Bioconductor version: Development (3.14)

barcodetrackR is an R package developed for the analysis and visualization of clonal tracking data. Data required is samples and tag abundances in matrix form. Usually from cellular barcoding experiments, integration site retrieval analyses, or similar technologies.

Author: Diego Alexander Espinoza [aut, cre], Ryland Mortlock [aut]

Maintainer: Diego Alexander Espinoza <diego.espinoza at pennmedicine.upenn.edu>

Citation (from within R, enter citation("barcodetrackR")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("barcodetrackR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("barcodetrackR")

 

HTML R Script barcodetrackR
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Sequencing, Software, Visualization
Version 1.1.0
In Bioconductor since BioC 3.13 (R-4.1) (< 6 months)
License file LICENSE
Depends R (>= 4.1)
Imports cowplot, circlize, dplyr, ggplot2, ggdendro, ggridges, graphics, grDevices, magrittr, plyr, proxy, RColorBrewer, rlang, scales, shiny, stats, SummarizedExperiment, S4Vectors, tibble, tidyr, vegan, viridis, utils
LinkingTo
Suggests BiocStyle, knitr, magick, rmarkdown, testthat
SystemRequirements
Enhances
URL https://github.com/dunbarlabNIH/barcodetrackR
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package barcodetrackR_1.1.0.tar.gz
Windows Binary barcodetrackR_1.1.0.zip
macOS 10.13 (High Sierra) barcodetrackR_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/barcodetrackR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/barcodetrackR
Package Short Url https://bioconductor.org/packages/barcodetrackR/
Package Downloads Report Download Stats

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