To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TFARM")

In most cases, you don't need to download the package archive at all.

TFARM

DOI: 10.18129/B9.bioc.TFARM    

This is the development version of TFARM; to use it, please install the devel version of Bioconductor.

Transcription Factors Association Rules Miner

Bioconductor version: Development (3.6)

It searches for relevant associations of transcription factors with a transcription factor target, in specific genomic regions. It also allows to evaluate the Importance Index distribution of transcription factors (and combinations of transcription factors) in association rules.

Author: Liuba Nausicaa Martino, Alice Parodi, Gaia Ceddia, Piercesare Secchi, Stefano Campaner, Marco Masseroli

Maintainer: Liuba Nausicaa Martino <liuban.martino at gmail.com>

Citation (from within R, enter citation("TFARM")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TFARM")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TFARM")

 

PDF R Script Transcription Factor Association Rule Miner
PDF   Reference Manual
Text   NEWS

Details

biocViews BiologicalQuestion, Infrastructure, Software, StatisticalMethod, Transcription
Version 0.99.11
License Artistic-2.0
Depends R (>= 3.4)
Imports arules, fields, GenomicRanges, graphics, grDevices, stringr, methods, stats
LinkingTo
Suggests plyr, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TFARM_0.99.11.tar.gz
Windows Binary TFARM_0.99.11.zip
Mac OS X 10.11 (El Capitan) TFARM_0.99.11.tgz
Source Repository git clone https://git.bioconductor.org/packages/TFARM
Package Short Url http://bioconductor.org/packages/TFARM/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: