RCyjs

DOI: 10.18129/B9.bioc.RCyjs    

This is the development version of RCyjs; for the stable release version, see RCyjs.

Display and manipulate graphs in cytoscape.js

Bioconductor version: Development (3.8)

Interactive viewing and exploration of graphs, connecting R to Cytoscape.js, using websockets.

Author: Paul Shannon

Maintainer: Paul Shannon <paul.thurmond.shannon at gmail.com>

Citation (from within R, enter citation("RCyjs")):

Installation

To install this package, start R and enter:

if (!require("BiocManager"))
    install.packages("BiocManager")
BiocManager::install("RCyjs", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RCyjs")

 

PDF R Script "RCyjs: programmatic access to the web browser-based network viewer, cytoscape.js"
HTML R Script RCyjs: programmatic access to the web browser-based network viewer, cytoscape.js
PDF   Reference Manual
Text   README
Text   NEWS
Text   LICENSE

Details

biocViews GraphAndNetwork, Software, ThirdPartyClient, Visualization
Version 2.3.9
In Bioconductor since BioC 3.1 (R-3.2) (3 years)
License MIT + file LICENSE
Depends R (>= 3.4.2), BrowserViz(>= 2.0.0), graph(>= 1.56.0)
Imports methods, httpuv (>= 1.4.0), BiocGenerics, base64enc, utils
LinkingTo
Suggests RUnit, BiocStyle, RefNet, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RCyjs_2.3.9.tar.gz
Windows Binary RCyjs_2.3.9.zip
Mac OS X 10.11 (El Capitan) RCyjs_2.3.9.tgz
Source Repository git clone https://git.bioconductor.org/packages/RCyjs
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RCyjs
Package Short Url http://bioconductor.org/packages/RCyjs/
Package Downloads Report Download Stats

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