To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicTuples")

In most cases, you don't need to download the package archive at all.

GenomicTuples

DOI: 10.18129/B9.bioc.GenomicTuples    

This is the development version of GenomicTuples; for the stable release version, see GenomicTuples.

Representation and Manipulation of Genomic Tuples

Bioconductor version: Development (3.7)

GenomicTuples defines general purpose containers for storing genomic tuples. It aims to provide functionality for tuples of genomic co-ordinates that are analogous to those available for genomic ranges in the GenomicRanges Bioconductor package.

Author: Peter Hickey <peter.hickey at gmail.com>, with contributions from Marcin Cieslik and Herve Pages.

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Citation (from within R, enter citation("GenomicTuples")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicTuples")

Documentation

HTML R Script GenomicTuplesIntroduction
PDF   Reference Manual
Text   NEWS

Details

biocViews DataRepresentation, Infrastructure, Sequencing, Software
Version 1.13.1
In Bioconductor since BioC 3.0 (R-3.1) (3 years)
License Artistic-2.0
Depends R (>= 3.3.0), GenomicRanges(>= 1.23.15), GenomeInfoDb(>= 1.7.2), S4Vectors(>= 0.9.38)
Imports methods, BiocGenerics(>= 0.17.0), Rcpp (>= 0.11.2), IRanges(>= 2.5.26), data.table
LinkingTo Rcpp
Suggests testthat, knitr, BiocStyle, rmarkdown
SystemRequirements
Enhances
URL www.github.com/PeteHaitch/GenomicTuples
BugReports https://github.com/PeteHaitch/GenomicTuples/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GenomicTuples_1.13.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) GenomicTuples_1.13.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/GenomicTuples
Package Short Url http://bioconductor.org/packages/GenomicTuples/
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