To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ExpressionAtlas")

In most cases, you don't need to download the package archive at all.

ExpressionAtlas

DOI: 10.18129/B9.bioc.ExpressionAtlas    

This is the development version of ExpressionAtlas; for the stable release version, see ExpressionAtlas.

Download datasets from EMBL-EBI Expression Atlas

Bioconductor version: Development (3.7)

This package is for searching for datasets in EMBL-EBI Expression Atlas, and downloading them into R for further analysis. Each Expression Atlas dataset is represented as a SimpleList object with one element per platform. Sequencing data is contained in a SummarizedExperiment object, while microarray data is contained in an ExpressionSet or MAList object.

Author: Maria Keays

Maintainer: Maria Keays <mkeays at ebi.ac.uk>

Citation (from within R, enter citation("ExpressionAtlas")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ExpressionAtlas")

Documentation

HTML R Script ExpressionAtlas
PDF   Reference Manual
Text   NEWS

Details

biocViews ArrayExpress, ExperimentData, ExpressionData, MicroarrayData, SequencingData, Software
Version 1.7.0
In Bioconductor since BioC 3.3 (R-3.3) (1.5 years)
License GPL (>= 3)
Depends R (>= 3.2.0), methods, Biobase, SummarizedExperiment, limma, S4Vectors, xml2
Imports utils, XML, httr
LinkingTo
Suggests knitr, testthat, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me Pi
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ExpressionAtlas_1.7.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) ExpressionAtlas_1.7.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ExpressionAtlas
Package Short Url http://bioconductor.org/packages/ExpressionAtlas/
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