DOI: 10.18129/B9.bioc.ExperimentSubset    

This is the development version of ExperimentSubset; for the stable release version, see ExperimentSubset.

Manages subsets of data with Bioconductor Experiment objects

Bioconductor version: Development (3.13)

Experiment objects such as the SummarizedExperiment or SingleCellExperiment are data containers for one or more matrix-like assays along with the associated row and column data. Often only a subset of the original data is needed for down-stream analysis. For example, filtering out poor quality samples will require excluding some columns before analysis. The ExperimentSubset object is a container to efficiently manage different subsets of the same data without having to make separate objects for each new subset.

Author: Irzam Sarfraz <irzam9095 at gmail.com>, Muhammad Asif <asif at ntu.edu.pk>, Joshua Campbell <camp at bu.edu>, D. Sarfraz <irzam9095 at gmail.com>

Maintainer: Irzam Sarfraz <irzam9095 at gmail.com>

Citation (from within R, enter citation("ExperimentSubset")):


To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews DataImport, DataRepresentation, Infrastructure, Software
Version 1.1.0
In Bioconductor since BioC 3.12 (R-4.0) (< 6 months)
License MIT + file LICENSE
Depends R (>= 4.0.0), SummarizedExperiment, SingleCellExperiment, SpatialExperiment, TreeSummarizedExperiment
Imports methods, Matrix, S4Vectors
Suggests BiocStyle, knitr, rmarkdown, testthat, covr, stats, scran, scater, scds, TENxPBMCData, airway
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Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/ExperimentSubset
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ExperimentSubset
Package Short Url https://bioconductor.org/packages/ExperimentSubset/
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