ExperimentSubset

DOI: 10.18129/B9.bioc.ExperimentSubset    

This is the development version of ExperimentSubset; for the stable release version, see ExperimentSubset.

Manages subsets of data with Bioconductor Experiment objects

Bioconductor version: Development (3.13)

Experiment objects such as the SummarizedExperiment or SingleCellExperiment are data containers for one or more matrix-like assays along with the associated row and column data. Often only a subset of the original data is needed for down-stream analysis. For example, filtering out poor quality samples will require excluding some columns before analysis. The ExperimentSubset object is a container to efficiently manage different subsets of the same data without having to make separate objects for each new subset.

Author: Irzam Sarfraz <irzam9095 at gmail.com>, Muhammad Asif <asif at ntu.edu.pk>, Joshua Campbell <camp at bu.edu>, D. Sarfraz <irzam9095 at gmail.com>

Maintainer: Irzam Sarfraz <irzam9095 at gmail.com>

Citation (from within R, enter citation("ExperimentSubset")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ExperimentSubset")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews DataImport, DataRepresentation, Infrastructure, Software
Version 1.1.0
In Bioconductor since BioC 3.12 (R-4.0) (< 6 months)
License MIT + file LICENSE
Depends R (>= 4.0.0), SummarizedExperiment, SingleCellExperiment, SpatialExperiment, TreeSummarizedExperiment
Imports methods, Matrix, S4Vectors
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, testthat, covr, stats, scran, scater, scds, TENxPBMCData, airway
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/ExperimentSubset
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ExperimentSubset
Package Short Url https://bioconductor.org/packages/ExperimentSubset/
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