ExiMiR

DOI: 10.18129/B9.bioc.ExiMiR  

This is the development version of ExiMiR; for the stable release version, see ExiMiR.

R functions for the normalization of Exiqon miRNA array data

Bioconductor version: Development (3.18)

This package contains functions for reading raw data in ImaGene TXT format obtained from Exiqon miRCURY LNA arrays, annotating them with appropriate GAL files, and normalizing them using a spike-in probe-based method. Other platforms and data formats are also supported.

Author: Sylvain Gubian <DL.RSupport at pmi.com>, Alain Sewer <DL.RSupport at pmi.com>, PMP SA

Maintainer: Sylvain Gubian <DL.RSupport at pmi.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ExiMiR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	GeneExpression, Microarray, OneChannel, Preprocessing, Software, Transcription, TwoChannel
Version	2.43.0
In Bioconductor since	BioC 2.8 (R-2.13) (12 years)
License	GPL-2
Depends	R (>= 2.10), Biobase(>= 2.5.5), affy(>= 1.26.1), limma
Imports	affyio(>= 1.13.3), Biobase(>= 2.5.5), preprocessCore(>= 1.10.0)
LinkingTo
Suggests	mirna10cdf
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary	ExiMiR_2.43.0.zip
macOS Binary (x86_64)	ExiMiR_2.43.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/ExiMiR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ExiMiR
Bioc Package Browser	https://code.bioconductor.org/browse/ExiMiR/
Package Short Url	https://bioconductor.org/packages/ExiMiR/
Package Downloads Report	Download Stats