ExiMiR

R functions for the normalization of Exiqon miRNA array data

Bioconductor version: Development (3.0)

This package contains functions for reading raw data in ImaGene TXT format obtained from Exiqon miRCURY LNA arrays, annotating them with appropriate GAL files, and normalizing them using a spike-in probe-based method. Other platforms and data formats are also supported.

Author: Sylvain Gubian <DL.RSupport at pmi.com>, Alain Sewer <DL.RSupport at pmi.com>, PMP SA

Maintainer: Sylvain Gubian <DL.RSupport at pmi.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ExiMiR")

To cite this package in a publication, start R and enter:

    citation("ExiMiR")

Documentation

PDF R Script Description of ExiMiR
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews GeneExpression, Microarray, OneChannel, Preprocessing, Software, Transcription, TwoChannel
Version 2.7.0
In Bioconductor since BioC 2.8 (R-2.13)
License GPL-2
Depends R (>= 2.10), Biobase(>= 2.5.5), affy(>= 1.26.1), limma
Imports affyio(>= 1.13.3), Biobase(>= 2.5.5), preprocessCore(>= 1.10.0)
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source ExiMiR_2.7.0.tar.gz
Windows Binary ExiMiR_2.7.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ExiMiR_2.7.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center