DEFormats

DOI: 10.18129/B9.bioc.DEFormats    

This is the development version of DEFormats; for the stable release version, see DEFormats.

Differential gene expression data formats converter

Bioconductor version: Development (3.15)

Convert between different data formats used by differential gene expression analysis tools.

Author: Andrzej Oleś

Maintainer: Andrzej Oleś <andrzej.oles at embl.de>

Citation (from within R, enter citation("DEFormats")):

Installation

To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DEFormats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription
Version 1.23.0
In Bioconductor since BioC 3.3 (R-3.3) (5.5 years)
License GPL-3
Depends
Imports checkmate, data.table, DESeq2, edgeR(>= 3.13.4), GenomicRanges, methods, S4Vectors, stats, SummarizedExperiment
LinkingTo
Suggests BiocStyle(>= 1.8.0), knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL https://github.com/aoles/DEFormats
BugReports https://github.com/aoles/DEFormats/issues
Depends On Me
Imports Me regionReport
Suggests Me ideal
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/DEFormats
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DEFormats
Package Short Url https://bioconductor.org/packages/DEFormats/
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