BiocPkgTools

DOI: 10.18129/B9.bioc.BiocPkgTools    

This is the development version of BiocPkgTools; for the stable release version, see BiocPkgTools.

Collection of simple tools for learning about Bioc Packages

Bioconductor version: Development (3.13)

Bioconductor has a rich ecosystem of metadata around packages, usage, and build status. This package is a simple collection of functions to access that metadata from R. The goal is to expose metadata for data mining and value-added functionality such as package searching, text mining, and analytics on packages.

Author: Shian Su <su.s at wehi.edu.au>, Lori Shepherd <Lori.Shepherd at roswellpark.org>, Marcel Ramos <marcel.ramos at roswellpark.org>, Felix G.M. Ernst <felix.gm.ernst at outlook.com>, Charlotte Soneson <charlottesoneson at gmail.com>, Martin Morgan <martin.morgan at roswellpark.org>, Vince Carey <stvjc at channing.harvard.edu>, Sean Davis <seandavi at gmail.com>

Maintainer: Sean Davis <seandavi at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BiocPkgTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Infrastructure, Software
Version	1.9.4
In Bioconductor since	BioC 3.8 (R-3.5) (2.5 years)
License	MIT + file LICENSE
Depends	htmlwidgets
Imports	BiocFileCache, BiocManager, biocViews, tibble, methods, rlang, tidyselect, stringr, rvest, rex, dplyr, xml2, readr, httr, htmltools, DT, tools, utils, igraph, tidyr, jsonlite, gh, RBGL, graph
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, testthat, tm, SnowballC, magrittr, visNetwork, clipr, blastula, kableExtra, DiagrammeR, SummarizedExperiment
SystemRequirements	mailsend-go
Enhances
URL	https://github.com/seandavi/BiocPkgTools
BugReports	https://github.com/seandavi/BiocPkgTools/issues/new
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/BiocPkgTools
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BiocPkgTools
Package Short Url	https://bioconductor.org/packages/BiocPkgTools/
Package Downloads Report	Download Stats