fission

DOI: 10.18129/B9.bioc.fission    

RangedSummarizedExperiment for time course RNA-Seq of fission yeast in response to stress, by Leong et al., Nat Commun 2014.

Bioconductor version: Release (3.7)

This package provides a RangedSummarizedExperiment object of read counts in genes for a time course RNA-Seq experiment of fission yeast (Schizosaccharomyces pombe) in response to oxidative stress (1M sorbitol treatment) at 0, 15, 30, 60, 120 and 180 mins. The samples are further divided between a wild-type group and a group with deletion of atf21. The read count matrix was prepared and provided by the author of the study: Leong HS, Dawson K, Wirth C, Li Y, Connolly Y, Smith DL, Wilkinson CR, Miller CJ. "A global non-coding RNA system modulates fission yeast protein levels in response to stress". Nat Commun 2014 May 23;5:3947. PMID: 24853205. GEO: GSE56761.

Author: Michael Love

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Citation (from within R, enter citation("fission")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("fission")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fission")

 

HTML R Script Fission yeast time course
PDF   Reference Manual

Details

biocViews ExperimentData, GEO, Genome, RNASeqData, Saccharomyces_cerevisiae_Data, SequencingData
Version 0.114.0
License LGPL
Depends R (>= 2.10), SummarizedExperiment
Imports
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
Depends On Me rnaseqGene
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package fission_0.114.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/fission
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/fission
Package Short Url http://bioconductor.org/packages/fission/
Package Downloads Report Download Stats

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