RTCGA.methylation

DOI: 10.18129/B9.bioc.RTCGA.methylation    

Methylation datasets from The Cancer Genome Atlas Project

Bioconductor version: Release (3.8)

Package provides methylation (humanmethylation27) datasets from The Cancer Genome Atlas Project for all available cohorts types from http://gdac.broadinstitute.org/. Data format is explained here https://wiki.nci.nih.gov/display/TCGA/DNA+methylation Data from 2015-11-01 snapshot.

Author: Marcin Kosinski [aut, cre], Witold Chodor [aut]

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Citation (from within R, enter citation("RTCGA.methylation")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("RTCGA.methylation", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTCGA.methylation")

 

HTML R Script Using RTCGA to download methylation data as included in RTCGA.methylation
PDF   Reference Manual
Text   NEWS

Details

biocViews AnnotationData, ExperimentData
Version 1.10.0
License GPL-2
Depends R (>= 3.3.0), RTCGA
Imports
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
BugReports https://github.com/RTCGA/RTCGA/issues
Depends On Me
Imports Me
Suggests Me RTCGA
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RTCGA.methylation_1.10.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/RTCGA.methylation
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RTCGA.methylation
Package Short Url http://bioconductor.org/packages/RTCGA.methylation/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: