DOI: 10.18129/B9.bioc.HarmonizedTCGAData    

Processed Harmonized TCGA Data of Five Selected Cancer Types

Bioconductor version: Release (3.8)

This package contains the processed harmonized TCGA data of five cancer types used in "Tianle Ma and Aidong Zhang, Integrate Multi-omic Data Using Affinity Network Fusion (ANF) for Cancer Patient Clustering".

Author: Tianle Ma

Maintainer: Tianle Ma <tianlema at buffalo.edu>

Citation (from within R, enter citation("HarmonizedTCGAData")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("HarmonizedTCGAData", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Patient Affinity Matrices Derived from Harmonized TCGA Dataset
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biocViews CancerData, ExperimentData, ReproducibleResearch
Version 1.4.0
License GPL-3
Depends R (>= 3.4.0)
Imports ExperimentHub
Suggests AnnotationHub, knitr, rmarkdown, igraph, survival, ANF, stats, testthat
Depends On Me
Imports Me
Suggests Me
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package HarmonizedTCGAData_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/HarmonizedTCGAData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HarmonizedTCGAData
Package Short Url http://bioconductor.org/packages/HarmonizedTCGAData/
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