To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("phastCons100way.UCSC.hg19")

In most cases, you don't need to download the package archive at all.

phastCons100way.UCSC.hg19

 

   

UCSC phastCons conservation scores for hg19

Bioconductor version: Release (3.3)

Store UCSC phastCons conservation scores for the human genome (hg19) calculated from multiple alignments with other 99 vertebrate species.

Author: Robert Castelo

Maintainer: Robert Castelo <robert.castelo at upf.edu>

Citation (from within R, enter citation("phastCons100way.UCSC.hg19")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("phastCons100way.UCSC.hg19")

Documentation

PDF   Reference Manual

Details

biocViews AnnotationData, Genetics, Homo_sapiens, PhastConsDb
Version 3.3.0
License Artistic-2.0
Depends R (>= 3.0.0), VariantFiltering(>= 1.7.28)
Imports utils, IRanges, GenomicRanges, BSgenome
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me VariantFiltering

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source phastCons100way.UCSC.hg19_3.3.0.tar.gz
Windows Binary
Mac OS X 10.9 (Mavericks)
Package Short Url http://bioconductor.org/packages/phastCons100way.UCSC.hg19/
Package Downloads Report Download Stats

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