To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("xmapbridge")

In most cases, you don't need to download the package archive at all.

xmapbridge

Export plotting files to the xmapBridge for visualisation in X:Map

Bioconductor version: Release (2.14)

xmapBridge can plot graphs in the X:Map genome browser. This package exports plotting files in a suitable format.

Author: Tim Yates <tyates at picr.man.ac.uk> and Crispin J Miller <cmiller at picr.man.ac.uk>

Maintainer: Tim Yates <tyates at picr.man.ac.uk>

Citation (from within R, enter citation("xmapbridge")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("xmapbridge")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("xmapbridge")

 

PDF R Script xmapbridge primer
PDF   Reference Manual

Details

biocViews Annotation, ReportWriting, Software, Visualization
Version 1.22.0
In Bioconductor since BioC 2.3 (R-2.8)
License LGPL-3
Depends R (>= 2.0), methods
Imports
Suggests RUnit, RColorBrewer
System Requirements
URL http://xmap.picr.man.ac.uk http://www.bioconductor.org
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source xmapbridge_1.22.0.tar.gz
Windows Binary xmapbridge_1.22.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) xmapbridge_1.22.0.tgz
Mac OS X 10.9 (Mavericks) xmapbridge_1.22.0.tgz
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