oppti

DOI: 10.18129/B9.bioc.oppti    

Outlier Protein and Phosphosite Target Identifier

Bioconductor version: Release (3.10)

The aim of oppti is to analyze protein (and phosphosite) expressions to find outlying markers for each sample in the given cohort(s) for the discovery of personalized actionable targets.

Author: Abdulkadir Elmas

Maintainer: Abdulkadir Elmas <abdulkadir.elmas at mssm.edu>

Citation (from within R, enter citation("oppti")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("oppti")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("oppti")

 

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Details

biocViews BiomedicalInformatics, DifferentialExpression, GeneExpression, GeneTarget, Network, Proteomics, Regression, Software
Version 1.0.0
In Bioconductor since BioC 3.10 (R-3.6) (< 6 months)
License MIT
Depends R (>= 3.6)
Imports limma, stats, reshape, ggplot2, grDevices, RColorBrewer, pheatmap, knitr, methods, devtools
LinkingTo
Suggests
SystemRequirements
Enhances
URL https://github.com/Huang-lab/oppti
BugReports https://github.com/Huang-lab/oppti/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package oppti_1.0.0.tar.gz
Windows Binary oppti_1.0.0.zip
Mac OS X 10.11 (El Capitan) oppti_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/oppti
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/oppti
Package Short Url https://bioconductor.org/packages/oppti/
Package Downloads Report Download Stats

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