To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("msgbsR")

In most cases, you don't need to download the package archive at all.

msgbsR

DOI: 10.18129/B9.bioc.msgbsR    

msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions

Bioconductor version: Release (3.6)

Pipeline for the anaysis of a MS-GBS experiment.

Author: Benjamin Mayne

Maintainer: Benjamin Mayne <benjamin.mayne at adelaide.edu.au>

Citation (from within R, enter citation("msgbsR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("msgbsR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("msgbsR")

 

PDF R Script msgbsR_Example
PDF   Reference Manual

Details

biocViews DataImport, DifferentialMethylation, Epigenetics, MethylSeq, Software
Version 1.2.0
In Bioconductor since BioC 3.5 (R-3.4) (0.5 years)
License GPL-2
Depends R (>= 3.4), GenomicRanges, methods
Imports BSgenome, easyRNASeq, edgeR, GenomicAlignments, GenomicFeatures, GenomeInfoDb, ggbio, ggplot2, IRanges, parallel, plyr, Rsamtools, R.utils, stats, SummarizedExperiment, S4Vectors, utils
LinkingTo
Suggests roxygen2, BSgenome.Rnorvegicus.UCSC.rn6
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package msgbsR_1.2.0.tar.gz
Windows Binary msgbsR_1.2.0.zip
Mac OS X 10.11 (El Capitan) msgbsR_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/msgbsR
Package Short Url http://bioconductor.org/packages/msgbsR/
Package Downloads Report Download Stats

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