To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("logicFS")

In most cases, you don't need to download the package archive at all.

logicFS

Identification of SNP Interactions

Bioconductor version: Release (3.1)

Identification of interactions between binary variables using Logic Regression. Can, e.g., be used to find interesting SNP interactions. Contains also a bagging version of logic regression for classification.

Author: Holger Schwender

Maintainer: Holger Schwender <holger.schw at gmx.de>

Citation (from within R, enter citation("logicFS")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("logicFS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("logicFS")

 

PDF R Script logicFS Manual
PDF   Reference Manual

Details

biocViews Classification, Genetics, SNP, Software
Version 1.38.0
In Bioconductor since BioC 1.8 (R-2.3)
License LGPL (>= 2)
Depends LogicReg, mcbiopi
Imports
LinkingTo
Suggests genefilter, siggenes
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me trio
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source logicFS_1.38.0.tar.gz
Windows Binary logicFS_1.38.0.zip
Mac OS X 10.6 (Snow Leopard) logicFS_1.38.0.tgz
Mac OS X 10.9 (Mavericks) logicFS_1.38.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center