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logicFS

This is the released version of logicFS; for the devel version, see logicFS.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Identification of SNP Interactions


Bioconductor version: Release (3.23)

Identification of interactions between binary variables using Logic Regression. Can, e.g., be used to find interesting SNP interactions. Contains also a bagging version of logic regression for classification.

Author: Holger Schwender, Tobias Tietz

Maintainer: Holger Schwender <holger.schw at gmx.de>

Citation (from within R, enter citation("logicFS")):

Holger Schwender, Tobias Tietz. logicFS: Identification of SNP Interactions. doi:10.18129/B9.bioc.logicFS, R package version 2.32.0, https://bioconductor.org/packages/logicFS.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("logicFS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("logicFS")
logicFS Manual PDF R Script
Reference ManualPDF

Details

biocViews Classification, Genetics, SNP, Software
Version2.32.0
In Bioconductor sinceBioC 1.8 (R-2.3) (20.5 years)
License LGPL (>= 2)
Depends LogicReg, mcbiopi, survival
Imports graphics, methods, stats
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Suggests genefilter, siggenes
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Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package logicFS_2.32.0.tar.gz
Windows Binary (x86_64) logicFS_2.32.0.zip
macOS Binary (big-sur-x86_64) logicFS_2.32.0.tgz
macOS Binary (sonoma-arm64) logicFS_2.32.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/logicFS
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/logicFS
Package Short Url https://bioconductor.org/packages/logicFS/
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