lmdme

Linear Model decomposition for Designed Multivariate Experiments

Bioconductor version: Release (2.14)

linear ANOVA decomposition of Multivariate Designed Experiments implementation based on limma lmFit. Features: i)Flexible formula type interface, ii) Fast limma based implementation, iii) p-values for each estimated coefficient levels in each factor, iv) F values for factor effects and v) plotting functions for PCA and PLS.

Author: Cristobal Fresno and Elmer A. Fernandez

Maintainer: Cristobal Fresno <cfresno at bdmg.com.ar>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("lmdme")

To cite this package in a publication, start R and enter:

    citation("lmdme")

Documentation

PDF R Script lmdme: linear model framework for PCA/PLS analysis of ANOVA decomposition on Designed Multivariate Experiments in R
PDF   Reference Manual
Text   NEWS

Details

biocViews Cancer, DifferentialExpression, ExperimentData, Microarray, OneChannel, Software, TwoChannel, Visualization
Version 1.6.0
In Bioconductor since BioC 2.11 (R-2.15)
License GPL (>=2)
Depends R (>= 2.14.1), pls, stemHypoxia
Imports stats, methods, limma
Suggests
System Requirements
URL http://www.bdmg.com.ar/?page_id=38
Depends On Me
Imports Me
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Package Downloads

Package Source lmdme_1.6.0.tar.gz
Windows Binary lmdme_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) lmdme_1.6.0.tgz
Mac OS X 10.9 (Mavericks)
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