To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("iSeq")

In most cases, you don't need to download the package archive at all.

iSeq

 

Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models

Bioconductor version: Release (3.1)

This package uses Bayesian hidden Ising models to identify IP-enriched genomic regions from ChIP-seq data. It can be used to analyze ChIP-seq data with and without controls and replicates.

Author: Qianxing Mo

Maintainer: Qianxing Mo <qmo at bcm.edu>

Citation (from within R, enter citation("iSeq")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("iSeq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSeq")

 

PDF R Script iSeq
PDF   Reference Manual
Text   NEWS

Details

biocViews ChIPSeq, Sequencing, Software
Version 1.20.0
In Bioconductor since BioC 2.7 (R-2.12) (4.5 years)
License GPL (>= 2)
Depends R (>= 2.10.0)
Imports
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Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source iSeq_1.20.0.tar.gz
Windows Binary iSeq_1.20.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) iSeq_1.20.0.tgz
Mac OS X 10.9 (Mavericks) iSeq_1.20.0.tgz
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