DOI: 10.18129/B9.bioc.gcatest  

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Genotype Conditional Association TEST

Bioconductor version: Release (3.17)

GCAT is an association test for genome wide association studies that controls for population structure under a general class of trait. models.

Author: Wei Hao, Minsun Song, John D. Storey

Maintainer: Wei Hao <whao at princeton.edu>, John D. Storey <jstorey at princeton.edu>

Citation (from within R, enter citation("gcatest")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


PDF   Reference Manual


biocViews DimensionReduction, GenomeWideAssociation, PrincipalComponent, SNP, Software
Version 1.30.0
In Bioconductor since BioC 3.2 (R-3.2) (7.5 years)
License GPL-3
Depends R (>= 3.2)
Imports lfa
Suggests knitr, ggplot2
URL https://github.com/StoreyLab/gcatest
BugReports https://github.com/StoreyLab/gcatest/issues
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