flowDensity

DOI: 10.18129/B9.bioc.flowDensity    

Sequential Flow Cytometry Data Gating

Bioconductor version: Release (3.10)

This package provides tools for automated sequential gating analogous to the manual gating strategy based on the density of the data.

Author: Mehrnoush Malek,M. Jafar Taghiyar

Maintainer: Mehrnoush Malek <mmalekes at bccrc.ca>

Citation (from within R, enter citation("flowDensity")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowDensity")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowDensity")

 

HTML R Script Introduction to automated gating
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews Bioinformatics, Cancer, CellBiology, Clustering, DataRepresentation, DensityGating, FlowCytData, FlowCytometry, Software, StemCell
Version 1.20.0
In Bioconductor since BioC 3.0 (R-3.1) (5 years)
License Artistic-2.0
Depends
Imports flowCore, graphics, flowViz(>= 1.46.1), car, sp, rgeos, gplots, RFOC, flowWorkspace(>= 3.33.1), methods, stats, grDevices
LinkingTo
Suggests knitr
SystemRequirements xml2, GNU make, C++11
Enhances
URL
Depends On Me
Imports Me ddPCRclust
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowDensity_1.20.0.tar.gz
Windows Binary flowDensity_1.20.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) flowDensity_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowDensity
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowDensity
Package Short Url https://bioconductor.org/packages/flowDensity/
Package Downloads Report Download Stats

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