To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("fdrame")

In most cases, you don't need to download the package archive at all.

fdrame

FDR adjustments of Microarray Experiments (FDR-AME)

Bioconductor version: Release (3.1)

This package contains two main functions. The first is fdr.ma which takes normalized expression data array, experimental design and computes adjusted p-values It returns the fdr adjusted p-values and plots, according to the methods described in (Reiner, Yekutieli and Benjamini 2002). The second, is fdr.gui() which creates a simple graphic user interface to access fdr.ma

Author: Yoav Benjamini, Effi Kenigsberg, Anat Reiner, Daniel Yekutieli

Maintainer: Effi Kenigsberg <effiken.fdrame at gmail.com>

Citation (from within R, enter citation("fdrame")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("fdrame")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fdrame")

 

PDF R Script Annotation Overview
PDF   Reference Manual

Details

biocViews DifferentialExpression, Microarray, MultipleComparison, Software
Version 1.40.0
In Bioconductor since BioC 1.7 (R-2.2)
License GPL (>= 2)
Depends
Imports tcltk, graphics, grDevices, stats, utils
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SystemRequirements
Enhances
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Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source fdrame_1.40.0.tar.gz
Windows Binary fdrame_1.40.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) fdrame_1.40.0.tgz
Mac OS X 10.9 (Mavericks) fdrame_1.40.0.tgz
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