To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("cnvGSA")

In most cases, you don't need to download the package archive at all.

cnvGSA

Gene Set Analysis of (Rare) Copy Number Variants

Bioconductor version: Release (3.0)

This package is intended to facilitate gene-set association with rare CNVs in case-control studies.

Author: Daniele Merico <daniele.merico at gmail.com>; packaged by Robert Ziman <rziman at gmail.com>

Maintainer: Robert Ziman <rziman at gmail.com>

Citation (from within R, enter citation("cnvGSA")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("cnvGSA")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cnvGSA")

 

PDF R Script cnvGSA - Gene-Set Analysis of Rare Copy Number Variants
PDF   Reference Manual

Details

biocViews MultipleComparison, Software
Version 1.10.0
In Bioconductor since BioC 2.10 (R-2.15)
License LGPL
Depends methods, brglm
Imports
Suggests cnvGSAdata, org.Hs.eg.db
SystemRequirements
URL
Depends On Me cnvGSAdata
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source cnvGSA_1.10.0.tar.gz
Windows Binary cnvGSA_1.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) cnvGSA_1.10.0.tgz
Mac OS X 10.9 (Mavericks) cnvGSA_1.10.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center