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cnvGSA

Gene Set Analysis of (Rare) Copy Number Variants


Bioconductor version: Release (3.20)

This package is intended to facilitate gene-set association with rare CNVs in case-control studies.

Author: Daniele Merico <daniele.merico at gmail.com>, Robert Ziman <rziman at gmail.com>; packaged by Joseph Lugo <joseph.r.lugo at gmail.com>

Maintainer: Joseph Lugo <joseph.r.lugo at gmail.com>

Citation (from within R, enter citation("cnvGSA")):

Installation

To install this package, start R (version "4.4") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cnvGSA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cnvGSA")
cnvGSA - Gene-Set Analysis of Rare Copy Number Variants PDF
cnvGSAUsersGuide.pdf PDF
Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews MultipleComparison, Software
Version 1.50.0
In Bioconductor since BioC 2.10 (R-2.15) (12.5 years)
License LGPL
Depends brglm, doParallel, foreach, GenomicRanges, methods, splitstackshape
Imports
System Requirements
URL
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Suggests cnvGSAdata, org.Hs.eg.db
Linking To
Enhances
Depends On Me cnvGSAdata
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cnvGSA_1.50.0.tar.gz
Windows Binary (x86_64) cnvGSA_1.50.0.zip
macOS Binary (x86_64) cnvGSA_1.50.0.tgz
macOS Binary (arm64) cnvGSA_1.50.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/cnvGSA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cnvGSA
Bioc Package Browser https://code.bioconductor.org/browse/cnvGSA/
Package Short Url https://bioconductor.org/packages/cnvGSA/
Package Downloads Report Download Stats