Wrench

This is the released version of Wrench; for the devel version, see Wrench.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8

Wrench normalization for sparse count data

Bioconductor version: Release (3.23)

Wrench is a package for normalization sparse genomic count data, like that arising from 16s metagenomic surveys.

Author: Senthil Kumar Muthiah [aut], Hector Corrada Bravo [aut, cre]

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Citation (from within R, enter citation("Wrench")):

Senthil Kumar Muthiah, Hector Corrada Bravo. Wrench: Wrench normalization for sparse count data. doi:10.18129/B9.bioc.Wrench, R package version 1.30.0, https://bioconductor.org/packages/Wrench.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Wrench")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Wrench")

Wrench	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Normalization, Sequencing, Software
Version	1.30.0
In Bioconductor since	BioC 3.8 (R-3.5) (8 years)
License	Artistic-2.0
Depends	R (>= 3.5.0)
Imports	limma, matrixStats, locfit, stats, graphics
System Requirements
URL	https://github.com/HCBravoLab/Wrench
Bug Reports	https://github.com/HCBravoLab/Wrench/issues

Suggests	knitr, rmarkdown, metagenomeSeq, DESeq2, edgeR
Linking To
Enhances
Depends On Me
Imports Me	metagenomeSeq
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Wrench_1.30.0.tar.gz
Windows Binary (x86_64)	Wrench_1.30.0.zip
macOS Binary (big-sur-x86_64)	Wrench_1.30.0.tgz
macOS Binary (sonoma-arm64)	Wrench_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Wrench
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Wrench
Package Short Url	https://bioconductor.org/packages/Wrench/
Package Downloads Report	Download Stats