To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SELEX")

In most cases, you don't need to download the package archive at all.

SELEX

DOI: 10.18129/B9.bioc.SELEX    

Functions for analyzing SELEX-seq data

Bioconductor version: Release (3.6)

Tools for quantifying DNA binding specificities based on SELEX-seq data

Author: Chaitanya Rastogi, Dahong Liu, and Harmen Bussemaker

Maintainer: Harmen Bussemaker <hjb2004 at columbia.edu>

Citation (from within R, enter citation("SELEX")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SELEX")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SELEX")

 

PDF R Script Motif Discovery with SELEX-seq
PDF   Reference Manual

Details

biocViews GeneRegulation, MotifAnnotation, MotifDiscovery, Software, Transcription
Version 1.10.0
In Bioconductor since BioC 3.1 (R-3.2) (2.5 years)
License GPL (>=2)
Depends R (>= 2.7.0), rJava (>= 0.5-0), Biostrings(>= 2.26.0)
Imports
LinkingTo
Suggests
SystemRequirements Java (>= 1.5)
Enhances
URL http://bussemakerlab.org/software/SELEX/
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SELEX_1.10.0.tar.gz
Windows Binary SELEX_1.10.0.zip
Mac OS X 10.11 (El Capitan) SELEX_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SELEX
Package Short Url http://bioconductor.org/packages/SELEX/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: