To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("SANTA")

In most cases, you don't need to download the package archive at all.

SANTA

Spatial Analysis of Network Associations

Bioconductor version: Release (2.14)

This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network. Vertices can also be individually ranked by their strength of association with high-weight vertices.

Author: Alex Cornish and Florian Markowetz

Maintainer: Alex Cornish <a.cornish12 at imperial.ac.uk>

Citation (from within R, enter citation("SANTA")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("SANTA")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SANTA")

 

PDF R Script Using SANTA
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, Network, NetworkEnrichment, Software
Version 1.4.0
In Bioconductor since BioC 2.12 (R-3.0)
License Artistic-2.0
Depends R (>= 2.14), igraph
Imports Matrix, msm, snow
Suggests RUnit, BiocGenerics, org.Sc.sgd.db
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source SANTA_1.4.0.tar.gz
Windows Binary SANTA_1.4.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) SANTA_1.4.0.tgz
Mac OS X 10.9 (Mavericks) SANTA_1.4.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

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